PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_001366-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 209aa    MW: 23182.6 Da    PI: 9.2344
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_001366-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.31.8e-051601951454
                    HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH  14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r+++ +  Lr ++P       k +s +++L +Av+Y+ksL
  NNU_001366-RA 160 LRMKKMIKALRGIVPGG-----KQMSTVSVLDEAVRYLKSL 195
                    58999999******987.....67***************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.448146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-5153201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-8158202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-6158202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.48E-5159200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MYVAVNLKRY QKVKEVGKIT MNVRVIACYQ LMQVCQTGNK NRIMFHPALA NKFSCPGFEI  60
CGTQIEDNGA RKDIDKDNIE SITPLKEDTE DINALLSLEE EEQEDGDVIS TARTHGSYSS  120
NSPDSCSTYG SKPSKRRLSS SIQNPFCGSG SSCNSETKRL RMKKMIKALR GIVPGGKQMS  180
TVSVLDEAVR YLKSLKVEVK KLGIGNFKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275462.11e-125PREDICTED: transcription factor bHLH144-like
TrEMBLB9S1501e-60B9S150_RICCO; Putative uncharacterized protein
STRINGVIT_10s0003g02940.t013e-55(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.21e-20bHLH family protein